rex.renewable_resource.WaveResource

class WaveResource(h5_file, mode='r', unscale=True, str_decode=True, group=None, hsds=False, hsds_kwargs=None)[source]

Bases: BaseResource

Class to handle Wave BaseResource .h5 files

See also

resource.BaseResource

Parent class

Parameters:
  • h5_file (str) – Path to .h5 resource file

  • mode (str, optional) – Mode to instantiate h5py.File instance, by default ‘r’

  • unscale (bool, optional) – Boolean flag to automatically unscale variables on extraction, by default True

  • str_decode (bool, optional) – Boolean flag to decode the bytestring meta data into normal strings. Setting this to False will speed up the meta data read, by default True

  • group (str, optional) – Group within .h5 resource file to open, by default None

  • hsds (bool, optional) – Boolean flag to use h5pyd to handle .h5 ‘files’ hosted on AWS behind HSDS, by default False

  • hsds_kwargs (dict, optional) – Dictionary of optional kwargs for h5pyd, e.g., bucket, username, password, by default None

Methods

close()

Close h5 instance

df_str_decode(df)

Decode a dataframe with byte string columns into ordinary str cols.

get_SAM_df(site)

Get SAM wave resource DataFrame for given site

get_attrs([dset])

Get h5 attributes either from file or dataset

get_dset_properties(dset)

Get dataset properties (shape, dtype, chunks)

get_meta_arr(rec_name[, rows])

Get a meta array by name (faster than DataFrame extraction).

get_scale_factor(dset)

Get dataset scale factor

get_units(dset)

Get dataset units

open_dataset(ds_name)

Open resource dataset

preload_SAM(h5_file, sites[, unscale, ...])

Pre-load project_points for SAM

Attributes

ADD_ATTR

SCALE_ATTR

UNIT_ATTR

adders

Dictionary of all dataset add offset factors

attrs

Dictionary of all dataset attributes

chunks

Dictionary of all dataset chunk sizes

coordinates

(lat, lon) pairs

data_version

Get the version attribute of the data.

datasets

Datasets available

dsets

Datasets available

dtypes

Dictionary of all dataset dtypes

global_attrs

Global (file) attributes

groups

Groups available

h5

Open h5py File instance.

lat_lon

Extract (latitude, longitude) pairs

meta

Resource meta data DataFrame

res_dsets

Available resource datasets

resource_datasets

Available resource datasets

scale_factors

Dictionary of all dataset scale factors

shape

Resource shape (timesteps, sites) shape = (len(time_index), len(meta))

shapes

Dictionary of all dataset shapes

time_index

Resource DatetimeIndex

units

Dictionary of all dataset units

get_SAM_df(site)[source]

Get SAM wave resource DataFrame for given site

Parameters:

site (int) – Site to extract SAM DataFrame for

Returns:

res_df (pandas.DataFrame) – time-series DataFrame of resource variables needed to run SAM

classmethod preload_SAM(h5_file, sites, unscale=True, str_decode=True, group=None, hsds=False, hsds_kwargs=None, means=False, time_index_step=None)[source]

Pre-load project_points for SAM

Parameters:
  • h5_file (str) – h5_file to extract resource from

  • sites (list) – List of sites to be provided to SAM (sites is synonymous with gids aka spatial indices)

  • unscale (bool) – Boolean flag to automatically unscale variables on extraction

  • str_decode (bool) – Boolean flag to decode the bytestring meta data into normal strings. Setting this to False will speed up the meta data read.

  • group (str) – Group within .h5 resource file to open

  • hsds (bool, optional) – Boolean flag to use h5pyd to handle .h5 ‘files’ hosted on AWS behind HSDS, by default False

  • hsds_kwargs (dict, optional) – Dictionary of optional kwargs for h5pyd, e.g., bucket, username, password, by default None

  • means (bool) – Boolean flag to compute mean resource when res_array is set

  • time_index_step (int, optional) – Step size for time_index, used to reduce temporal resolution, by default None

Returns:

SAM_res (SAMResource) – Instance of SAMResource pre-loaded with Wave resource for sites in project_points

property adders

Dictionary of all dataset add offset factors

Returns:

adders (dict)

property attrs

Dictionary of all dataset attributes

Returns:

attrs (dict)

property chunks

Dictionary of all dataset chunk sizes

Returns:

chunks (dict)

close()

Close h5 instance

property coordinates

(lat, lon) pairs

Returns:

lat_lon (ndarray)

Type:

Coordinates

property data_version

Get the version attribute of the data. None if not available.

Returns:

version (str | None)

property datasets

Datasets available

Returns:

list

static df_str_decode(df)

Decode a dataframe with byte string columns into ordinary str cols.

Parameters:

df (pd.DataFrame) – Dataframe with some columns being byte strings.

Returns:

df (pd.DataFrame) – DataFrame with str columns instead of byte str columns.

property dsets

Datasets available

Returns:

list

property dtypes

Dictionary of all dataset dtypes

Returns:

dtypes (dict)

get_attrs(dset=None)

Get h5 attributes either from file or dataset

Parameters:

dset (str) – Dataset to get attributes for, if None get file (global) attributes

Returns:

attrs (dict) – Dataset or file attributes

get_dset_properties(dset)

Get dataset properties (shape, dtype, chunks)

Parameters:

dset (str) – Dataset to get scale factor for

Returns:

  • shape (tuple) – Dataset array shape

  • dtype (str) – Dataset array dtype

  • chunks (tuple) – Dataset chunk size

get_meta_arr(rec_name, rows=slice(None, None, None))

Get a meta array by name (faster than DataFrame extraction).

Parameters:
  • rec_name (str) – Named record from the meta data to retrieve.

  • rows (slice) – Rows of the record to extract.

Returns:

meta_arr (np.ndarray) – Extracted array from the meta data record name.

get_scale_factor(dset)

Get dataset scale factor

Parameters:

dset (str) – Dataset to get scale factor for

Returns:

float – Dataset scale factor, used to unscale int values to floats

get_units(dset)

Get dataset units

Parameters:

dset (str) – Dataset to get units for

Returns:

str – Dataset units, None if not defined

property global_attrs

Global (file) attributes

Returns:

global_attrs (dict)

property groups

Groups available

Returns:

groups (list) – List of groups

property h5

Open h5py File instance. If _group is not None return open Group

Returns:

h5 (h5py.File | h5py.Group)

property lat_lon

Extract (latitude, longitude) pairs

Returns:

lat_lon (ndarray)

property meta

Resource meta data DataFrame

Returns:

meta (pandas.DataFrame)

open_dataset(ds_name)

Open resource dataset

Parameters:

ds_name (str) – Dataset name to open

Returns:

ds (ResourceDataset) – Resource for open resource dataset

property res_dsets

Available resource datasets

Returns:

list

property resource_datasets

Available resource datasets

Returns:

list

property scale_factors

Dictionary of all dataset scale factors

Returns:

scale_factors (dict)

property shape

Resource shape (timesteps, sites) shape = (len(time_index), len(meta))

Returns:

shape (tuple)

property shapes

Dictionary of all dataset shapes

Returns:

shapes (dict)

property time_index

Resource DatetimeIndex

Returns:

time_index (pandas.DatetimeIndex)

property units

Dictionary of all dataset units

Returns:

units (dict)