Index

A

assemble_geom() (in module bird.meshing.block_cyl_mesh) (in module bird.meshing.block_rect_mesh)

assemble_mesh() (in module bird.meshing.block_cyl_mesh) (in module bird.meshing.block_rect_mesh)

B

bayes_fit() (in module bird.postprocess.early_pred) bayes_step() (in module bird.postprocess.early_pred) (in module bird.postprocess.kla_utils) bird.calibration.scaling module bird.meshing.block_cyl_mesh module bird.meshing.block_rect_mesh module bird.meshing.stirred_tank_mesh module bird.postprocess.conditional_mean module bird.postprocess.early_pred module bird.postprocess.kla_utils module bird.postprocess.post_quantities module bird.postprocess.stats module bird.preprocess.dynamic_mixer.io_fvModels module

bird.preprocess.dynamic_mixer.mixer module bird.preprocess.dynamic_mixer.mixing_fvModels module bird.preprocess.json_gen.design_io module bird.preprocess.json_gen.generate_designs module bird.preprocess.species_gen.setup_thermo_prop module bird.preprocess.stl_patch.stl_bc module bird.preprocess.stl_patch.stl_mesh module bird.preprocess.stl_patch.stl_shapes module bird.utilities.mathtools module bird.utilities.ofio module bird.utilities.parser module bird.utilities.stl_plotting module

C

c_model() (in module bird.postprocess.kla_utils) calc_area() (bird.preprocess.stl_patch.stl_mesh.STLMesh method) calc_mean() (in module bird.postprocess.stats) check_config() (in module bird.preprocess.json_gen.generate_designs) check_data_size() (in module bird.postprocess.kla_utils) check_input() (in module bird.preprocess.dynamic_mixer.mixing_fvModels) (in module bird.preprocess.stl_patch.stl_bc) check_sparger_config() (in module bird.preprocess.json_gen.generate_designs) check_status() (bird.preprocess.dynamic_mixer.mixer.Mixer method) compare_config() (in module bird.preprocess.json_gen.generate_designs) compare_old_new_prop() (in module bird.preprocess.species_gen.setup_thermo_prop)

compute_accuracy() (in module bird.postprocess.kla_utils) compute_ave_bubble_diam() (in module bird.postprocess.post_quantities) compute_ave_conc_liq() (in module bird.postprocess.post_quantities) compute_ave_y_liq() (in module bird.postprocess.post_quantities) compute_cond_mean() (in module bird.postprocess.conditional_mean) compute_fitted_kla() (in module bird.postprocess.post_quantities) compute_gas_holdup() (in module bird.postprocess.post_quantities) compute_instantaneous_kla() (in module bird.postprocess.post_quantities) compute_kla() (in module bird.postprocess.kla_utils) compute_superficial_gas_velocity() (in module bird.postprocess.post_quantities) conditional_average() (in module bird.utilities.mathtools) create_boundary_patch_list() (in module bird.preprocess.stl_patch.stl_shapes)

F

fit_and_ext() (in module bird.postprocess.early_pred) from_block_rect_to_seg() (in module bird.meshing.block_rect_mesh)

from_mesh_list() (bird.preprocess.stl_patch.stl_mesh.STLMesh method) from_stl() (bird.preprocess.stl_patch.stl_mesh.STLMesh method)

G

generate_dynamic_mixer() (in module bird.preprocess.json_gen.design_io) generate_scaledup_reactor_cases() (in module bird.preprocess.json_gen.generate_designs) generate_single_scaledup_reactor_sparger_cases() (in module bird.preprocess.json_gen.generate_designs) generate_small_reactor_cases() (in module bird.preprocess.json_gen.generate_designs) generate_stl_patch() (in module bird.preprocess.json_gen.design_io) get_all_vert_faces() (in module bird.preprocess.stl_patch.stl_bc) get_baffle_point_of() (in module bird.meshing.stirred_tank_mesh)

get_case_times() (in module bird.utilities.ofio) get_cent_from_branch() (in module bird.preprocess.stl_patch.stl_shapes) get_globalindex_of() (in module bird.meshing.stirred_tank_mesh) get_reactor_geom() (in module bird.meshing.stirred_tank_mesh) get_species_key_pair() (in module bird.preprocess.species_gen.setup_thermo_prop) get_species_name() (in module bird.utilities.ofio) get_species_properties() (in module bird.preprocess.species_gen.setup_thermo_prop)

H

hmc_samples_2_np_samples() (in module bird.postprocess.kla_utils)

I

id2simfolder() (in module bird.preprocess.json_gen.generate_designs)

L

load_config_dict() (in module bird.preprocess.json_gen.generate_designs)

M

main() (in module bird.meshing.block_cyl_mesh) (in module bird.meshing.block_rect_mesh) make_circle() (in module bird.preprocess.stl_patch.stl_shapes) make_default_geom_dict_from_file() (in module bird.preprocess.json_gen.design_io) make_fluid_blocks_from_corner() (in module bird.meshing.block_rect_mesh) make_polygon() (in module bird.preprocess.stl_patch.stl_shapes) make_rectangle() (in module bird.preprocess.stl_patch.stl_shapes) make_spider() (in module bird.preprocess.stl_patch.stl_shapes) Mixer (class in bird.preprocess.dynamic_mixer.mixer) module bird.calibration.scaling bird.meshing.block_cyl_mesh bird.meshing.block_rect_mesh bird.meshing.stirred_tank_mesh bird.postprocess.conditional_mean bird.postprocess.early_pred bird.postprocess.kla_utils bird.postprocess.post_quantities bird.postprocess.stats bird.preprocess.dynamic_mixer.io_fvModels bird.preprocess.dynamic_mixer.mixer bird.preprocess.dynamic_mixer.mixing_fvModels bird.preprocess.json_gen.design_io bird.preprocess.json_gen.generate_designs bird.preprocess.species_gen.setup_thermo_prop bird.preprocess.stl_patch.stl_bc bird.preprocess.stl_patch.stl_mesh bird.preprocess.stl_patch.stl_shapes bird.utilities.mathtools bird.utilities.ofio bird.utilities.parser bird.utilities.stl_plotting

multi_data_load() (in module bird.postprocess.early_pred)

N

np_samples_2_pred() (in module bird.postprocess.kla_utils)

O

overwrite_bubble_size_model() (in module bird.preprocess.json_gen.generate_designs)

overwrite_vvm() (in module bird.preprocess.json_gen.generate_designs)

P

parse_json() (in module bird.utilities.parser) parse_yaml() (in module bird.utilities.parser) plotAllEarly() (in module bird.postprocess.early_pred)

plotAllEarly_uq() (in module bird.postprocess.early_pred) plotSTL() (in module bird.utilities.stl_plotting) post_cal() (in module bird.postprocess.kla_utils) print_res_dict() (in module bird.postprocess.kla_utils)

R

read_bubble_diameter() (in module bird.utilities.ofio) read_cell_centers() (in module bird.utilities.ofio) read_cell_volumes() (in module bird.utilities.ofio) read_field() (in module bird.utilities.ofio) read_global_vars() (in module bird.utilities.ofio)

read_kla_cstar() (in module bird.postprocess.kla_utils) read_mu_liquid() (in module bird.utilities.ofio) read_openfoam_dict() (in module bird.utilities.ofio) readSizeGroups() (in module bird.utilities.ofio) rotate() (bird.preprocess.stl_patch.stl_mesh.STLMesh method)

S

save() (bird.preprocess.stl_patch.stl_mesh.STLMesh method) save_cond() (in module bird.postprocess.conditional_mean) save_config_dict() (in module bird.preprocess.json_gen.generate_designs) scale_par() (in module bird.calibration.scaling) scale_x() (in module bird.calibration.scaling) scale_y() (in module bird.calibration.scaling)

sequencePlot() (in module bird.postprocess.conditional_mean) sigm_fit() (in module bird.postprocess.early_pred) sigm_fit_jax() (in module bird.postprocess.early_pred) smooth() (in module bird.postprocess.early_pred) species_name_to_mw() (in module bird.utilities.ofio) STLMesh (class in bird.preprocess.stl_patch.stl_mesh)

T

to_stl() (bird.preprocess.stl_patch.stl_mesh.STLMesh method)

translate() (bird.preprocess.stl_patch.stl_mesh.STLMesh method)

U

unscale_par() (in module bird.calibration.scaling) unscale_x() (in module bird.calibration.scaling) unscale_y() (in module bird.calibration.scaling) update() (bird.preprocess.stl_patch.stl_mesh.STLMesh method)

update_from_expl_dict() (bird.preprocess.dynamic_mixer.mixer.Mixer method) update_from_loop_dict() (bird.preprocess.dynamic_mixer.mixer.Mixer method) update_gas_thermo_prop() (in module bird.preprocess.species_gen.setup_thermo_prop) update_liq_thermo_prop() (in module bird.preprocess.species_gen.setup_thermo_prop) update_status() (bird.preprocess.stl_patch.stl_mesh.STLMesh method)

W

write_blocks() (in module bird.meshing.block_rect_mesh) (in module bird.meshing.stirred_tank_mesh) write_boundaries() (in module bird.preprocess.stl_patch.stl_bc) write_edges() (in module bird.meshing.stirred_tank_mesh) write_end() (in module bird.preprocess.dynamic_mixer.io_fvModels) write_fvModel() (in module bird.preprocess.dynamic_mixer.mixing_fvModels) write_mixer() (in module bird.preprocess.dynamic_mixer.io_fvModels) write_mixer_force_sign() (in module bird.preprocess.dynamic_mixer.io_fvModels) write_ofoam_preamble() (in module bird.meshing.block_rect_mesh) (in module bird.meshing.stirred_tank_mesh) write_openfoam_dict() (in module bird.utilities.ofio) write_patches() (in module bird.meshing.block_rect_mesh) (in module bird.meshing.stirred_tank_mesh)

write_preamble() (in module bird.preprocess.dynamic_mixer.io_fvModels) write_prep() (in module bird.preprocess.json_gen.generate_designs) write_script_post() (in module bird.preprocess.json_gen.generate_designs) write_script_start() (in module bird.preprocess.json_gen.generate_designs) write_species_properties() (in module bird.preprocess.species_gen.setup_thermo_prop) write_this_block() (in module bird.meshing.block_rect_mesh) (in module bird.meshing.stirred_tank_mesh) write_vertices() (in module bird.meshing.block_rect_mesh) (in module bird.meshing.stirred_tank_mesh) writeBlockMeshDict() (in module bird.meshing.block_cyl_mesh) (in module bird.meshing.block_rect_mesh)