gaps.hpc

HPC Execution utilities.

Module attributes

DEFAULT_STDOUT_PATH

Default directory for .stdout and .stderr files.

Functions

format_env([conda_env])	Get special sbatch request strings for SLURM conda environments.
format_walltime([hours])	Get the SLURM walltime string in format "HH:MM:SS"
make_sh(fname, script)	Make a shell script (.sh file) to execute a subprocess.
submit(cmd[, background, background_stdout])	Open a subprocess and submit a command.

Classes

COMMANDS(SUBMIT, CANCEL)	Create new instance of COMMANDS(SUBMIT, CANCEL)
HpcJobManager([user, queue_dict])	Abstract HPC job manager framework
PBS([user, queue_dict])	Subclass for PBS subprocess jobs.
Q_COLUMNS(NAME, ID, STATUS)	Create new instance of Q_COLUMNS(NAME, ID, STATUS)
SLURM([user, queue_dict])	Subclass for SLURM subprocess jobs.